Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs9963714 chr18:33592056 T/C 0.000136 119 49.4 35 51.23 KM Plot
THYM rs9986090 chr4:143374681 G/A 0.000185 119 38.33 46.43 18.42 KM Plot
THYM rs9992888 chr4:9649863 C/T 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs9992908 chr4:9649931 C/T 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs9998519 chr4:6292909 C/T 1.25E-6 119 25.83 38.58 50.13 KM Plot
THYM rs9998835 chr4:6293237 C/G 1.25E-6 119 25.83 38.58 50.13 KM Plot
UCEC rs10031012 chr4:57229210 T/C 1.59E-5 174 33.28 21.6 18.67 KM Plot
UCEC rs10036474 chr5:54370231 C/T 3.32E-7 174 20.33 27.53 21.1 KM Plot
UCEC rs10037065 chr5:54370089 T/C 3.87E-7 174 21.1 27.53 20.33 KM Plot
UCEC rs10037755 chr5:54385769 C/T 0.000122 173 21.07 25.8 18.47 KM Plot
UCEC rs10043107 chr5:143531857 G/T 9.1E-9 171 22.57 29.03 2.45 KM Plot
UCEC rs10043273 chr5:54423032 C/G 2.79E-7 173 21.55 24.07 20.33 KM Plot
UCEC rs10043664 chr5:54428310 G/T 3.55E-7 174 21.55 25.8 20.33 KM Plot
UCEC rs10045164 chr5:54449825 A/G 1.78E-9 169 22.57 22.7 20.33 KM Plot
UCEC rs10050963 chr5:54442925 G/A 1.56E-7 170 21.55 23.43 20.33 KM Plot